nextstrain/nextclade

Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement

⭐ 251 | 🍴 66

GregorySchwartz/too-many-cells

Cluster single cells and analyze cell clade relationships with colorful visualizations.

⭐ 115 | 🍴 19

nicolas-dufour/SCAM

Code for SCAM! Transferring humans between images with Semantic Cross Attention Modulation. Also contains implementation for SPADE, CLADE, SEAN and INADE

⭐ 56 | 🍴 1

andersen-lab/avian-influenza

Consensus sequences for U.S. H5N1 clade 2.3.4.4b

⭐ 37 | 🍴 10